Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family membrane protein | H9N25_19755 | T2KPJ3 | Negative | 4805132 - 4808277 | 114101.0 |
| hypothetical protein | H9N25_19760 | Not Available | Negative | 4808631 - 4809119 | 17526.4 |
| duf5011 domain-containing protein | H9N25_19765 | Not Available | Negative | 4809130 - 4809783 | 22630.6 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | H9N25_19770 | Not Available | Negative | 4809804 - 4811276 | 54350.3 |
| susc/raga family tonb-linked outer membrane protein | H9N25_19775 | T2KPJ3 | Negative | 4811288 - 4814458 | 114591.0 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | H9N25_19780 | Not Available | Negative | 4814825 - 4816252 | 51855.3 |
| doxx family membrane protein | H9N25_19785 | Not Available | Negative | 4816269 - 4819489 | 117949.0 |
| zinc carboxypeptidase | H9N25_19790 | Not Available | Negative | 4819908 - 4822400 | 93904.6 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | H9N25_19795 | Not Available | Negative | 4822556 - 4823974 | 50988.0 |
| susc/raga family tonb-linked outer membrane protein | H9N25_19800 | T2KM18 | Negative | 4823987 - 4827034 | 110115.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

