Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ld-carboxypeptidase | H9N25_19705 | O34851 | Positive | 4790122 - 4791021 | 33380.3 |
| doxx family protein | H9N25_19710 | P96694 | Positive | 4791023 - 4791430 | 14401.3 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_19715 | T2KN63 | Negative | 4791485 - 4792948 | 52914.9 |
| tonb-dependent receptor | H9N25_19720 | T2KPJ3 | Negative | 4792968 - 4796150 | 114641.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_19725 | T2KN63 | Negative | 4796888 - 4798252 | 50011.5 |
| hypothetical protein | H9N25_19730 | T2KPJ3 | Negative | 4798264 - 4798869 | 22088.8 |
| susc/raga family tonb-linked outer membrane protein | H9N25_19735 | T2KPJ3 | Negative | 4798887 - 4801268 | 85873.9 |
| hypothetical protein | H9N25_19740 | Not Available | Negative | 4801639 - 4802343 | 26551.7 |
| duf1735 domain-containing protein | H9N25_19745 | Not Available | Negative | 4802555 - 4803514 | 34475.9 |
| susd/ragb family nutrient-binding outer membrane lipoprotein | H9N25_19750 | Not Available | Negative | 4803522 - 4805120 | 56920.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

