Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| swim zinc finger family protein | H9N25_19500 | Not Available | Positive | 4742172 - 4743494 | 49506.0 |
| hypothetical protein | H9N25_19505 | Not Available | Negative | 4743836 - 4745056 | 48189.2 |
| hypothetical protein | H9N25_19510 | Not Available | Positive | 4745426 - 4745629 | 6643.49 |
| tetratricopeptide repeat protein | H9N25_19515 | Not Available | Positive | 4745771 - 4746448 | 25960.2 |
| hypothetical protein | H9N25_19520 | P54663 | Positive | 4746439 - 4747443 | 38463.3 |
| response regulator transcription factor | H9N25_19525 | Not Available | Positive | 4747454 - 4748119 | 25211.7 |
| yegp family protein | H9N25_19530 | Q8FG00 | Positive | 4748440 - 4748772 | 12078.1 |
| type i restriction enzyme hsdr n-terminal domain-containing protein | H9N25_19535 | Not Available | Positive | 4748783 - 4749847 | 41326.4 |
| hypothetical protein | H9N25_19540 | Not Available | Positive | 4750006 - 4750344 | 13163.1 |
| ph domain-containing protein | H9N25_19545 | O29568 | Positive | 4750589 - 4751191 | 23061.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

