Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| serine/threonine-protein kinase | H9N25_19450 | P62046 | Negative | 4728995 - 4730296 | 47337.1 |
| abc-f family atp-binding cassette domain-containing protein | H9N25_19455 | O05519 | Negative | 4730349 - 4731938 | 59586.5 |
| sulfur carrier protein this | H9N25_19460 | O32583 | Positive | 4732547 - 4732750 | 7238.74 |
| phosphomethylpyrimidine synthase thic | H9N25_19465 | Q88DA5 | Positive | 4732765 - 4734648 | 69924.4 |
| thiamine phosphate synthase | H9N25_19470 | Q9RGS5 | Positive | 4734655 - 4735269 | 23085.9 |
| thiamine phosphate synthase | H9N25_19475 | A5FJJ1 | Positive | 4735266 - 4735901 | 22875.8 |
| thiazole synthase | H9N25_19480 | A6GWS0 | Positive | 4735913 - 4736683 | 27472.3 |
| 2-iminoacetate synthase thih | H9N25_19485 | P30140 | Positive | 4736670 - 4737794 | 43148.6 |
| hesa/moeb/thif family protein | H9N25_19490 | Q72J02 | Positive | 4737788 - 4738831 | 37611.7 |
| wgr domain-containing protein | H9N25_19495 | P78271 | Positive | 4739078 - 4742170 | 118530.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

