Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family protein | H9N25_01905 | Not Available | Negative | 492366 - 492812 | 16648.0 |
| response regulator | H9N25_01910 | T2KMF4 | Negative | 492882 - 493706 | 31219.5 |
| histidine kinase | H9N25_01915 | T2KMF4 | Negative | 493691 - 496861 | 120004.0 |
| tonb-dependent receptor | H9N25_01920 | Q8A1G1 | Positive | 498067 - 501207 | 117667.0 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_01925 | T2KN63 | Positive | 501227 - 503131 | 70409.9 |
| duf3823 domain-containing protein | H9N25_01930 | Not Available | Positive | 503144 - 503845 | 25273.3 |
| doxx family membrane protein | H9N25_01935 | Not Available | Positive | 504151 - 505121 | 36257.4 |
| glycoside hydrolase family 43 protein | H9N25_01940 | Q82P90 | Positive | 505236 - 506276 | 38636.6 |
| cellulase family glycosylhydrolase | H9N25_01945 | Q0CUG5 | Positive | 506344 - 507372 | 39348.5 |
| doxx family membrane protein | H9N25_01950 | T2KM09 | Positive | 507653 - 509421 | 65290.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

