Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dipeptide epimerase | H9N25_19400 | Q8A861 | Negative | 4718392 - 4719423 | 38210.4 |
| hypothetical protein | H9N25_19405 | Not Available | Positive | 4719520 - 4720635 | 42639.6 |
| hypothetical protein | H9N25_19410 | Not Available | Positive | 4720798 - 4721781 | 37901.6 |
| rhomboid family intramembrane serine protease | H9N25_19415 | O14364 | Negative | 4721899 - 4722513 | 23159.6 |
| m14 family metallopeptidase | H9N25_19420 | A6XHF7 | Negative | 4722519 - 4724258 | 66158.0 |
| hypothetical protein | H9N25_19425 | Not Available | Negative | 4724289 - 4725005 | 26921.0 |
| peptidase t | H9N25_19430 | A8FIY2 | Positive | 4725080 - 4726333 | 46067.8 |
| hypothetical protein | H9N25_19435 | Not Available | Negative | 4726413 - 4726742 | 12575.9 |
| doxx family membrane protein | H9N25_19440 | P42096 | Positive | 4726880 - 4727745 | 30904.8 |
| voc family protein | H9N25_19445 | P16681 | Positive | 4728441 - 4728866 | 15933.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

