Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-binding protein | H9N25_19350 | P24518 | Negative | 4707254 - 4707784 | 20318.2 |
| carboxypeptidase regulatory-like domain-containing protein | H9N25_19355 | Not Available | Positive | 4708221 - 4708538 | 10981.6 |
| carbamoyl-phosphate synthase large subunit | H9N25_19360 | O28994 | Positive | 4708745 - 4711582 | 104867.0 |
| sigma-70 family rna polymerase sigma factor | H9N25_19365 | L0TCG5 | Positive | 4711646 - 4712506 | 32287.8 |
| carboxymuconolactone decarboxylase family protein | H9N25_19370 | P76222 | Positive | 4712559 - 4713119 | 21253.2 |
| m20/m25/m40 family metallo-hydrolase | H9N25_19375 | C0NVM2 | Negative | 4713233 - 4714540 | 47754.1 |
| m61 family metallopeptidase | H9N25_19380 | Not Available | Negative | 4714559 - 4716391 | 68220.0 |
| doxx family membrane protein | H9N25_19385 | Not Available | Negative | 4716533 - 4717659 | 41295.9 |
| rhodanese-like domain-containing protein | H9N25_19390 | B4NXF7 | Positive | 4717789 - 4718106 | 11940.3 |
| hypothetical protein | H9N25_19395 | Not Available | Positive | 4718217 - 4718414 | 7597.45 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

