Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cobalamin b12-binding domain-containing protein | H9N25_19300 | I3VE74 | Negative | 4692552 - 4692971 | 15203.7 |
| glutamine--trna ligase/yqey domain fusion protein | H9N25_19305 | Q0SVB1 | Positive | 4693234 - 4694889 | 63400.0 |
| n-acetylmuramoyl-l-alanine amidase | H9N25_19310 | P75820 | Negative | 4695065 - 4695901 | 30834.8 |
| zn-dependent hydrolase | H9N25_19315 | Q8L831 | Positive | 4696015 - 4697694 | 62567.0 |
| tonb-dependent receptor | H9N25_19320 | Not Available | Positive | 4698174 - 4700618 | 91132.5 |
| gnat family n-acetyltransferase | H9N25_19325 | Q9HL57 | Negative | 4700850 - 4701344 | 18848.8 |
| thiamine pyrophosphokinase | H9N25_19330 | Not Available | Negative | 4701341 - 4701901 | 21204.2 |
| hypothetical protein | H9N25_19335 | P94572 | Negative | 4701965 - 4703257 | 50039.0 |
| thiamine phosphate synthase | H9N25_19340 | Q8AA13 | Negative | 4703317 - 4703961 | 23624.1 |
| tonb-dependent receptor | H9N25_19345 | T2KMI3 | Negative | 4704075 - 4706489 | 89875.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

