Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_19250 | Not Available | Negative | 4683293 - 4683766 | 17983.0 |
| rna polymerase sigma factor | H9N25_19255 | O07582 | Negative | 4683813 - 4684370 | 21753.1 |
| hypothetical protein | H9N25_19260 | Not Available | Positive | 4685013 - 4685417 | 15700.0 |
| aspartate--trna ligase | H9N25_19265 | Q7MXM0 | Positive | 4685966 - 4687711 | 66033.1 |
| hypothetical protein | H9N25_19270 | Not Available | Negative | 4687893 - 4688330 | 16560.3 |
| phage holin family protein | H9N25_19275 | Not Available | Negative | 4688317 - 4688694 | 14098.2 |
| ytxh domain-containing protein | H9N25_19280 | Not Available | Negative | 4688749 - 4689015 | 9381.03 |
| ai-2e family transporter | H9N25_19285 | P9WFM2 | Negative | 4689089 - 4690138 | 39314.6 |
| sigma-54-dependent fis family transcriptional regulator | H9N25_19290 | P14375 | Negative | 4690203 - 4691618 | 53010.9 |
| enoyl-coa hydratase/isomerase family protein | H9N25_19295 | P52046 | Negative | 4691769 - 4692548 | 27662.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

