Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 88 protein | H9N25_19200 | O34559 | Negative | 4670892 - 4672823 | 71853.7 |
| glycoside hydrolase family 28 protein | H9N25_19205 | A7PZL3 | Negative | 4672823 - 4674496 | 60500.1 |
| pectin esterase | H9N25_19210 | Q9LVQ0 | Negative | 4674656 - 4675612 | 35710.9 |
| glycoside hydrolase 43 family protein | H9N25_19215 | Q9WXE8 | Positive | 4675924 - 4677564 | 61253.8 |
| rhamnogalacturonan acetylesterase | H9N25_19220 | O31523 | Positive | 4677569 - 4678360 | 29881.1 |
| hypothetical protein | H9N25_19225 | Not Available | Negative | 4678389 - 4678640 | 9611.03 |
| mhs family mfs transporter | H9N25_19230 | P0DPR5 | Negative | 4678652 - 4680175 | 55688.9 |
| hypothetical protein | H9N25_19235 | Q8XAZ3 | Positive | 4680326 - 4681216 | 34102.4 |
| tlpa family protein disulfide reductase | H9N25_19240 | A0RBT0 | Negative | 4681251 - 4681796 | 20523.8 |
| hypothetical protein | H9N25_19245 | Not Available | Negative | 4681865 - 4683121 | 44970.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

