Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pectin esterase | H9N25_19150 | P41510 | Positive | 4657813 - 4658835 | 38308.6 |
| rhamnogalacturonan acetylesterase | H9N25_19155 | O31523 | Positive | 4658844 - 4659584 | 27436.2 |
| nadp-dependent glyceraldehyde-3-phosphate dehydrogenase | H9N25_19160 | Q59931 | Negative | 4659709 - 4661334 | 60240.6 |
| mfs transporter | H9N25_19165 | P0AA79 | Negative | 4661447 - 4662886 | 53456.7 |
| doxx family membrane protein | H9N25_19170 | Not Available | Negative | 4662908 - 4663569 | 23696.4 |
| sugar kinase | H9N25_19175 | D4GSE6 | Negative | 4663562 - 4664617 | 38842.4 |
| glucuronate isomerase | H9N25_19180 | A5FC03 | Negative | 4664732 - 4666132 | 53724.5 |
| altronate dehydratase | H9N25_19185 | O34673 | Negative | 4666336 - 4667982 | 59655.1 |
| tagaturonate reductase | H9N25_19190 | Q97L67 | Negative | 4667984 - 4669495 | 56135.1 |
| doxx family membrane protein | H9N25_19195 | Not Available | Negative | 4669574 - 4670604 | 37924.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

