Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| mbl fold metallo-hydrolase | H9N25_19050 | P75849 | Negative | 4630809 - 4631447 | 23574.9 |
| gliding motility lipoprotein gldd | H9N25_19055 | Not Available | Negative | 4631496 - 4632083 | 23029.6 |
| shikimate dehydrogenase | H9N25_19060 | A9AB08 | Negative | 4632139 - 4632882 | 27381.0 |
| phosphosulfolactate synthase | H9N25_19065 | O27710 | Negative | 4632966 - 4633733 | 28581.4 |
| tetratricopeptide repeat protein | H9N25_19070 | Not Available | Negative | 4633794 - 4635197 | 54790.9 |
| nuclear transport factor 2 family protein | H9N25_19075 | Not Available | Positive | 4635448 - 4635906 | 16997.6 |
| m1 family metallopeptidase | H9N25_19080 | Q4TT88 | Negative | 4636043 - 4638553 | 93817.0 |
| trab/gumn family protein | H9N25_19085 | E7F4V6 | Negative | 4638659 - 4639540 | 33206.6 |
| ahpc/tsa family protein | H9N25_19090 | Q73B22 | Positive | 4639673 - 4640785 | 42081.7 |
| aldehyde dehydrogenase family protein | H9N25_19095 | P49419 | Positive | 4640950 - 4642491 | 54665.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

