Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 2-oxo acid dehydrogenase subunit e2 | H9N25_18900 | P08461 | Positive | 4602394 - 4604055 | 57747.3 |
| duf885 domain-containing protein | H9N25_18905 | Not Available | Positive | 4604195 - 4605973 | 66830.0 |
| hypothetical protein | H9N25_18910 | O34612 | Positive | 4606175 - 4606726 | 20641.1 |
| beta-lactamase family protein | H9N25_18915 | P32959 | Positive | 4606795 - 4608024 | 47156.6 |
| ybab/ebfc family nucleoid-associated protein | H9N25_18920 | A0M2C1 | Positive | 4608307 - 4608612 | 10811.9 |
| metal-dependent hydrolase | H9N25_18925 | A5FG55 | Positive | 4608712 - 4609389 | 24727.7 |
| hypothetical protein | H9N25_18930 | Not Available | Negative | 4609707 - 4610048 | 11834.6 |
| tonb family protein | H9N25_18935 | Not Available | Negative | 4610155 - 4611024 | 32831.9 |
| doxx family membrane protein | H9N25_18940 | Q9F173 | Negative | 4611045 - 4613851 | 104063.0 |
| cpbp family intramembrane metalloprotease | H9N25_18945 | Not Available | Negative | 4613947 - 4614702 | 29500.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

