Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxy terminal-processing peptidase | H9N25_18850 | P43669 | Positive | 4590864 - 4593053 | 81017.9 |
| helix-turn-helix transcriptional regulator | H9N25_18855 | O32071 | Negative | 4593118 - 4594038 | 35258.3 |
| sdr family oxidoreductase | H9N25_18860 | Q9Y7K4 | Negative | 4594047 - 4594940 | 31849.0 |
| spfh domain-containing protein | H9N25_18865 | Q9SRH6 | Negative | 4595137 - 4596069 | 34656.0 |
| m13 family metallopeptidase | H9N25_18870 | Q8IS64 | Positive | 4596246 - 4598288 | 77280.9 |
| hypothetical protein | H9N25_18875 | Not Available | Positive | 4598404 - 4598589 | 6623.29 |
| hypothetical protein | H9N25_18880 | Not Available | Negative | 4598610 - 4598792 | 6553.37 |
| capa family protein | H9N25_18885 | P19579 | Negative | 4599028 - 4600125 | 40175.3 |
| c40 family peptidase | H9N25_18890 | P45296 | Negative | 4600316 - 4600873 | 20951.0 |
| pyruvate dehydrogenase (acetyl-transferring) e1 component subunit alpha | H9N25_18895 | Q4UKQ6 | Positive | 4601368 - 4602363 | 37018.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

