Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m1 family metallopeptidase | H9N25_18750 | P55786 | Negative | 4570896 - 4573268 | 89540.6 |
| hupe/urej family protein | H9N25_18755 | Not Available | Negative | 4573280 - 4573864 | 22056.9 |
| class i sam-dependent methyltransferase | H9N25_18760 | Q4FNA2 | Positive | 4574121 - 4574786 | 25965.5 |
| hypothetical protein | H9N25_18765 | Not Available | Positive | 4574841 - 4575353 | 19463.8 |
| hypothetical protein | H9N25_18770 | Not Available | Positive | 4575488 - 4576756 | 48791.1 |
| uracil phosphoribosyltransferase | H9N25_18775 | B2RIV3 | Positive | 4576847 - 4577491 | 23770.1 |
| doxx family membrane protein | H9N25_18780 | Not Available | Positive | 4577530 - 4577846 | 11747.8 |
| noncanonical pyrimidine nucleotidase, yjjg family | H9N25_18785 | O06480 | Positive | 4577887 - 4578576 | 26579.7 |
| duf4476 domain-containing protein | H9N25_18790 | Not Available | Positive | 4578652 - 4579356 | 27173.7 |
| dinb family protein | H9N25_18795 | Not Available | Positive | 4579376 - 4579888 | 19457.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

