Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alginate lyase family protein | H9N25_18700 | Not Available | Positive | 4561578 - 4562663 | 41584.8 |
| transcriptional regulator | H9N25_18705 | Q58958 | Positive | 4562726 - 4563232 | 19239.3 |
| duf393 domain-containing protein | H9N25_18710 | Not Available | Positive | 4563453 - 4564268 | 31482.6 |
| tigr01777 family protein | H9N25_18715 | P73467 | Positive | 4564274 - 4565239 | 35609.1 |
| srpbcc family protein | H9N25_18720 | Not Available | Positive | 4565265 - 4565714 | 17324.6 |
| duf4834 family protein | H9N25_18725 | Not Available | Negative | 4565783 - 4566031 | 9514.87 |
| ywbe family protein | H9N25_18730 | P39588 | Negative | 4566156 - 4566353 | 7186.62 |
| duf3472 domain-containing protein | H9N25_18735 | Not Available | Negative | 4566410 - 4567702 | 48185.8 |
| excinuclease abc subunit uvrb | H9N25_18740 | Q11Z64 | Negative | 4567780 - 4569828 | 77829.2 |
| duf4143 domain-containing protein | H9N25_18745 | P9WLM8 | Positive | 4570053 - 4570526 | 18443.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

