Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| polysaccharide biosynthesis/export family protein | H9N25_18600 | Q46629 | Negative | 4536392 - 4537198 | 29313.3 |
| histidinol phosphatase | H9N25_18605 | P96717 | Negative | 4537368 - 4538105 | 28309.2 |
| nucleotide sugar dehydrogenase | H9N25_18610 | Q04972 | Negative | 4540138 - 4541415 | 46800.6 |
| glucose-1-phosphate thymidylyltransferase rfba | H9N25_18615 | P55254 | Negative | 4541868 - 4542728 | 31370.1 |
| dtdp-4-dehydrorhamnose reductase | H9N25_18620 | O66251 | Negative | 4542800 - 4543660 | 31497.8 |
| dtdp-4-dehydrorhamnose 3,5-epimerase | H9N25_18625 | P37780 | Negative | 4543657 - 4544205 | 20633.4 |
| dtdp-glucose 4,6-dehydratase | H9N25_18630 | P37777 | Negative | 4544205 - 4545257 | 39847.4 |
| hypothetical protein | H9N25_18635 | Not Available | Negative | 4546102 - 4546314 | 8130.99 |
| duf3109 family protein | H9N25_18640 | Not Available | Negative | 4546616 - 4547179 | 21399.7 |
| duf3108 domain-containing protein | H9N25_18645 | Not Available | Negative | 4547182 - 4547955 | 29407.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

