Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| comf family protein | H9N25_18500 | Q8X715 | Positive | 4510216 - 4510914 | 25940.7 |
| hypothetical protein | H9N25_18505 | Not Available | Positive | 4510974 - 4512344 | 50355.2 |
| glutamine--fructose-6-phosphate transaminase (isomerizing) | H9N25_18510 | Q8AAB1 | Negative | 4512746 - 4514584 | 67685.0 |
| serine hydroxymethyltransferase | H9N25_18515 | Q11NZ7 | Negative | 4514731 - 4516002 | 45816.4 |
| segregation/condensation protein a | H9N25_18520 | P35154 | Negative | 4516065 - 4516808 | 28672.6 |
| 1-deoxy-d-xylulose-5-phosphate synthase | H9N25_18525 | Q11NY7 | Positive | 4517022 - 4518950 | 70314.4 |
| gliding motility protein remb | H9N25_18530 | Not Available | Negative | 4519075 - 4520703 | 61835.8 |
| undecaprenyl-phosphate glucose phosphotransferase | H9N25_18535 | Q48460 | Negative | 4520815 - 4522206 | 54059.2 |
| mannose-1-phosphate guanylyltransferase | H9N25_18540 | Q07024 | Negative | 4522479 - 4523555 | 40079.0 |
| nad(p)-dependent oxidoreductase | H9N25_18545 | Q8X7P7 | Negative | 4523569 - 4524543 | 36353.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

