Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yafy family transcriptional regulator | H9N25_18450 | O34920 | Positive | 4499021 - 4499710 | 26899.8 |
| dinb family protein | H9N25_18455 | Not Available | Positive | 4499847 - 4500344 | 18563.2 |
| nad(p)h-dependent oxidoreductase | H9N25_18460 | P0AGE7 | Positive | 4500464 - 4500985 | 18578.4 |
| 23s rrna pseudouridine(2604) synthase rluf | H9N25_18465 | P32684 | Positive | 4501013 - 4501987 | 36196.3 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | H9N25_18470 | Q11QF0 | Positive | 4502077 - 4503132 | 39473.2 |
| 5s ribosomal rna | Not Available | Not Available | Positive | 4503693 - 4503804 | Not Available |
| 23s ribosomal rna | Not Available | Not Available | Positive | 4503951 - 4506827 | Not Available |
| Trna-ala | Not Available | Not Available | Positive | 4507229 - 4507301 | Not Available |
| Trna-ile | Not Available | Not Available | Positive | 4507384 - 4507458 | Not Available |
| 16s ribosomal rna | Not Available | Not Available | Positive | 4507647 - 4509163 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

