Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family membrane protein | H9N25_01805 | Q63DQ8 | Positive | 469115 - 469453 | 13135.8 |
| rna polymerase sigma-70 factor | H9N25_01810 | P23484 | Positive | 469848 - 470414 | 21889.5 |
| duf4974 domain-containing protein | H9N25_01815 | Not Available | Positive | 470505 - 471674 | 43381.9 |
| susc/raga family tonb-linked outer membrane protein | H9N25_01820 | T2KM18 | Positive | 471824 - 473578 | 64749.9 |
| tonb-dependent receptor | H9N25_01825 | T2KMI3 | Positive | 473524 - 475026 | 55837.1 |
| tonb-dependent receptor | H9N25_01830 | T2KPJ3 | Positive | 475035 - 475391 | 13460.4 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_01835 | T2KN63 | Positive | 475417 - 477189 | 66172.7 |
| alpha-l-fucosidase | H9N25_01840 | P10901 | Positive | 477481 - 479289 | 67050.9 |
| alkaline phosphatase family protein | H9N25_01845 | Not Available | Positive | 479385 - 480476 | 41111.4 |
| endonuclease/exonuclease/phosphatase family protein | H9N25_01850 | Q9GUC9 | Positive | 480484 - 482082 | 60544.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

