Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arac family transcriptional regulator | H9N25_18400 | Q65Q31 | Positive | 4489178 - 4490116 | 36183.1 |
| aldo/keto reductase | H9N25_18405 | A2XRZ0 | Positive | 4490161 - 4491162 | 36628.0 |
| nitronate monooxygenase | H9N25_18410 | Q9I4V0 | Negative | 4491285 - 4492241 | 33925.4 |
| amidohydrolase family protein | H9N25_18415 | Q8TRA4 | Negative | 4492246 - 4493412 | 43545.1 |
| Trna-thr | Not Available | Not Available | Positive | 4493536 - 4493608 | Not Available |
| hypothetical protein | H9N25_18425 | Not Available | Positive | 4493902 - 4494216 | 11148.4 |
| hypothetical protein | H9N25_18430 | Not Available | Positive | 4494296 - 4494607 | 11092.3 |
| hypothetical protein | H9N25_18435 | Not Available | Positive | 4494688 - 4495002 | 11145.4 |
| sigma-54-dependent fis family transcriptional regulator | H9N25_18440 | P14375 | Positive | 4495073 - 4496404 | 49481.6 |
| response regulator | H9N25_18445 | Q9KLK7 | Negative | 4496407 - 4498881 | 93906.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

