Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| asp-trna(asn)/glu-trna(gln) amidotransferase subunit gata | H9N25_18350 | B3QYQ7 | Negative | 4479801 - 4481219 | 51304.2 |
| twin-arginine translocase tata/tate family subunit | H9N25_18355 | A6H2G3 | Negative | 4481238 - 4481414 | 6208.73 |
| twin-arginine translocase tata/tate family subunit | H9N25_18360 | B3EMS7 | Negative | 4481449 - 4481808 | 13188.7 |
| peptidoglycan dd-metalloendopeptidase family protein | H9N25_18365 | Not Available | Negative | 4481856 - 4483151 | 48542.2 |
| duf4292 domain-containing protein | H9N25_18370 | Not Available | Negative | 4483338 - 4484129 | 29293.7 |
| tetratricopeptide repeat protein | H9N25_18375 | O94826 | Negative | 4484107 - 4485804 | 63821.1 |
| dutp diphosphatase | H9N25_18380 | B2RJH1 | Negative | 4485858 - 4486289 | 15591.9 |
| polysaccharide biosynthesis c-terminal domain-containing protein | H9N25_18385 | Q58467 | Negative | 4486356 - 4487837 | 56546.4 |
| acylphosphatase | H9N25_18390 | Q1WUK1 | Negative | 4487915 - 4488187 | 10359.4 |
| hypothetical protein | H9N25_18395 | Not Available | Positive | 4488529 - 4488894 | 13855.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

