Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ferrous iron transport protein a | H9N25_18300 | Q7MV19 | Negative | 4459637 - 4459852 | 7836.81 |
| tonb-dependent receptor | H9N25_18305 | Not Available | Negative | 4459950 - 4462721 | 103018.0 |
| outer membrane beta-barrel protein | H9N25_18310 | Not Available | Negative | 4462898 - 4465708 | 102510.0 |
| vanz family protein | H9N25_18315 | Not Available | Negative | 4466033 - 4466389 | 13596.7 |
| glycine cleavage system protein gcvh | H9N25_18320 | A6LGR3 | Negative | 4466469 - 4466849 | 13831.2 |
| hypothetical protein | H9N25_18325 | Not Available | Positive | 4467101 - 4467565 | 17722.2 |
| doxx family membrane protein | H9N25_18330 | Not Available | Negative | 4467793 - 4474991 | 259663.0 |
| holliday junction branch migration protein ruva | H9N25_18335 | Q11Z44 | Negative | 4475003 - 4475587 | 21389.2 |
| nadp-dependent malic enzyme | H9N25_18340 | P76558 | Negative | 4475594 - 4477915 | 84590.9 |
| transglycosylase slt domain-containing protein | H9N25_18345 | P0AEZ8 | Negative | 4478186 - 4479589 | 52271.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

