Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metallophosphoesterase | H9N25_18245 | Q9LXI4 | Negative | 4444948 - 4446153 | 45286.1 |
| n-acetylglucosamine-6-phosphate deacetylase | H9N25_18250 | O32445 | Positive | 4446239 - 4447330 | 39435.7 |
| 3',5'-cyclic-nucleotide phosphodiesterase | H9N25_18255 | Q56686 | Positive | 4447341 - 4448303 | 35446.0 |
| tonb-dependent receptor | H9N25_18260 | P38370 | Positive | 4448359 - 4451631 | 120061.0 |
| doxx family membrane protein | H9N25_18265 | Not Available | Positive | 4451965 - 4453419 | 51295.9 |
| ump kinase | H9N25_18270 | Q11XK2 | Positive | 4453555 - 4454259 | 25956.8 |
| ribosome recycling factor | H9N25_18275 | A5FMF6 | Positive | 4454298 - 4454861 | 20697.0 |
| laci family dna-binding transcriptional regulator | H9N25_18280 | Q45831 | Negative | 4454921 - 4455937 | 38016.2 |
| lrp/asnc ligand binding domain-containing protein | H9N25_18290 | P44337 | Positive | 4456577 - 4457053 | 17898.9 |
| ferrous iron transport protein b | H9N25_18295 | Q5XPH7 | Negative | 4457517 - 4459631 | 78184.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

