Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_18195 | Not Available | Positive | 4435615 - 4436034 | 16453.8 |
| duf1801 domain-containing protein | H9N25_18200 | Not Available | Positive | 4436113 - 4436487 | 14281.3 |
| duf4419 domain-containing protein | H9N25_18205 | Q5UQ60 | Positive | 4436579 - 4437919 | 50864.0 |
| rna-binding transcriptional accessory protein | H9N25_18210 | P71353 | Positive | 4438032 - 4440320 | 85078.0 |
| nicotinamide mononucleotide transporter | H9N25_18215 | P24520 | Positive | 4440498 - 4441160 | 25849.3 |
| orf6n domain-containing protein | H9N25_18220 | Not Available | Positive | 4441239 - 4441772 | 20681.3 |
| 50s ribosomal protein l13 | H9N25_18225 | Q14KZ8 | Positive | 4442144 - 4442587 | 16374.1 |
| 30s ribosomal protein s9 | H9N25_18230 | Q11QN5 | Positive | 4442591 - 4442977 | 14173.5 |
| 30s ribosomal protein s2 | H9N25_18235 | Q11QN6 | Positive | 4442996 - 4443829 | 30849.3 |
| elongation factor ts | H9N25_18240 | Q11QN7 | Positive | 4443959 - 4444804 | 29860.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

