Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 3 | H9N25_18145 | P40406 | Positive | 4422113 - 4423813 | 62402.9 |
| hypothetical protein | H9N25_18150 | Not Available | Positive | 4424027 - 4424230 | 7630.02 |
| thioredoxin family protein | H9N25_18155 | Not Available | Negative | 4424314 - 4424847 | 19514.4 |
| tatd family hydrolase | H9N25_18160 | Q148G4 | Positive | 4425040 - 4425699 | 24686.3 |
| trna threonylcarbamoyladenosine dehydratase | H9N25_18165 | Q46927 | Positive | 4425830 - 4426624 | 28794.4 |
| uvrd-helicase domain-containing protein | H9N25_18170 | Q5FJX0 | Positive | 4426704 - 4429922 | 122348.0 |
| pd-(d/e)xk nuclease family protein | H9N25_18175 | B9DRU9 | Positive | 4429930 - 4432785 | 109145.0 |
| gnat family n-acetyltransferase | H9N25_18180 | O34569 | Positive | 4433007 - 4433564 | 21813.0 |
| voc family protein | H9N25_18185 | P67925 | Positive | 4433588 - 4433944 | 13393.8 |
| pyruvate dehydrogenase complex e1 component subunit beta | H9N25_18190 | Q9R9N4 | Positive | 4434141 - 4435127 | 35935.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

