Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dmt family transporter | H9N25_18045 | P38943 | Positive | 4405720 - 4406583 | 32630.0 |
| phosphoenolpyruvate synthase | H9N25_18050 | O34309 | Negative | 4406633 - 4409254 | 97205.7 |
| sdr family oxidoreductase | H9N25_18055 | P0CU01 | Positive | 4409586 - 4410389 | 28699.3 |
| arac family transcriptional regulator | H9N25_18060 | P17410 | Positive | 4410450 - 4411358 | 34962.7 |
| Trna-ser | Not Available | Not Available | Positive | 4411379 - 4411463 | Not Available |
| giy-yig nuclease family protein | H9N25_18070 | Q49UZ7 | Negative | 4411466 - 4411708 | 9830.77 |
| pyruvate kinase | H9N25_18075 | Q55863 | Negative | 4411897 - 4413327 | 52345.5 |
| ipexxxvdy family protein | H9N25_18080 | Not Available | Negative | 4413478 - 4413897 | 16411.9 |
| acyl carrier protein | H9N25_18085 | Q11V97 | Positive | 4414056 - 4414292 | 8460.92 |
| beta-ketoacyl-acp synthase ii | H9N25_18090 | O34340 | Positive | 4414314 - 4415567 | 44436.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

