Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ytxh domain-containing protein | H9N25_17995 | Not Available | Negative | 4395168 - 4395395 | 7552.17 |
| hypothetical protein | H9N25_18000 | Not Available | Positive | 4395475 - 4395840 | 13388.1 |
| hypothetical protein | H9N25_18005 | Not Available | Positive | 4396412 - 4397398 | 38188.2 |
| hypothetical protein | H9N25_18010 | Not Available | Negative | 4397457 - 4399127 | 65457.6 |
| sam-dependent methyltransferase | H9N25_18015 | Q9KGL2 | Positive | 4399406 - 4400107 | 26237.6 |
| hypothetical protein | H9N25_18020 | Not Available | Positive | 4400347 - 4400526 | 6543.53 |
| dinb family protein | H9N25_18025 | Q02886 | Negative | 4400617 - 4401084 | 18376.7 |
| hypothetical protein | H9N25_18030 | Not Available | Positive | 4401488 - 4402255 | 27126.2 |
| epimerase | H9N25_18035 | A3LQJ9 | Negative | 4402335 - 4403006 | 24890.3 |
| dpp iv n-terminal domain-containing protein | H9N25_18040 | Q7MUW6 | Negative | 4403215 - 4405344 | 79457.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

