Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor | H9N25_17945 | Q9HUX3 | Positive | 4380427 - 4382865 | 89446.7 |
| hypothetical protein | H9N25_17950 | Not Available | Positive | 4382931 - 4383575 | 23985.4 |
| pepsy domain-containing protein | H9N25_17955 | Not Available | Positive | 4383735 - 4384940 | 45669.1 |
| hypothetical protein | H9N25_17960 | Not Available | Positive | 4384964 - 4385902 | 36075.5 |
| m28 family peptidase | H9N25_17965 | P25152 | Positive | 4386292 - 4387431 | 41612.2 |
| hypothetical protein | H9N25_17970 | Not Available | Positive | 4387588 - 4388664 | 41377.7 |
| outer membrane beta-barrel protein | H9N25_17975 | Not Available | Positive | 4388948 - 4391722 | 103079.0 |
| llm class flavin-dependent oxidoreductase | H9N25_17980 | P39606 | Negative | 4391843 - 4392844 | 37408.6 |
| methyltransferase domain-containing protein | H9N25_17985 | Not Available | Negative | 4392916 - 4393602 | 26073.0 |
| mbl fold metallo-hydrolase | H9N25_17990 | Q5SLP1 | Negative | 4393704 - 4395104 | 52118.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

