Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family membrane protein | H9N25_01755 | O67886 | Positive | 457273 - 458619 | 50882.4 |
| heavy metal translocating p-type atpase metal-binding domain-containing protein | H9N25_01760 | O33533 | Positive | 458633 - 461017 | 88892.6 |
| cbb3-type cytochrome oxidase assembly protein ccos | H9N25_01765 | Not Available | Positive | 461014 - 461193 | 6677.93 |
| cytochrome-c oxidase, cbb3-type subunit i | H9N25_01770 | D9IA43 | Positive | 461266 - 463407 | 81059.0 |
| hypothetical protein | H9N25_01775 | Not Available | Positive | 463411 - 463593 | 6977.75 |
| c-type cytochrome | H9N25_01780 | D3NRE7 | Positive | 463781 - 464548 | 28652.2 |
| cytochrome c oxidase accessory protein ccog | H9N25_01785 | P18396 | Positive | 464532 - 465923 | 53019.1 |
| fixh family protein | H9N25_01790 | Not Available | Positive | 465983 - 466411 | 16360.1 |
| sulfite exporter taue/safe family protein | H9N25_01795 | Not Available | Positive | 466408 - 467097 | 25217.2 |
| l,d-transpeptidase family protein | H9N25_01800 | P44285 | Positive | 467406 - 468860 | 55887.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

