Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| four helix bundle protein | H9N25_17895 | Not Available | Negative | 4368673 - 4369029 | 13794.9 |
| n-acetyl-gamma-glutamyl-phosphate reductase | H9N25_17900 | Q5LHZ1 | Negative | 4369148 - 4370128 | 35621.8 |
| argininosuccinate synthase | H9N25_17905 | Q8P8J4 | Negative | 4370223 - 4371410 | 43957.4 |
| gnat family n-acetyltransferase | H9N25_17910 | Not Available | Negative | 4371412 - 4372110 | 26567.6 |
| duf4397 domain-containing protein | H9N25_17915 | Not Available | Positive | 4372692 - 4373393 | 24919.4 |
| duf5007 domain-containing protein | H9N25_17920 | Not Available | Negative | 4373512 - 4374495 | 37036.8 |
| hypothetical protein | H9N25_17925 | Not Available | Negative | 4374514 - 4375092 | 21718.7 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_17930 | T2KPM5 | Negative | 4375227 - 4376162 | 35370.1 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_17935 | T2KPM5 | Negative | 4376162 - 4376743 | 22151.5 |
| susc/raga family tonb-linked outer membrane protein | H9N25_17940 | T2KMI3 | Negative | 4376755 - 4379964 | 118039.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

