Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| slipin family protein | H9N25_17845 | Q5UP73 | Positive | 4354622 - 4355719 | 41926.3 |
| rtcb family protein | H9N25_17850 | P46850 | Positive | 4355783 - 4357207 | 51528.9 |
| doxx family membrane protein | H9N25_17855 | P53001 | Negative | 4357399 - 4358651 | 45087.5 |
| argininosuccinate lyase | H9N25_17860 | A6LI67 | Negative | 4358653 - 4359984 | 49673.9 |
| s9 family peptidase | H9N25_17865 | Q84LM4 | Positive | 4360174 - 4363017 | 105805.0 |
| m20 family metallo-hydrolase | H9N25_17870 | O74916 | Negative | 4363063 - 4364133 | 39386.9 |
| pyrroline-5-carboxylate reductase | H9N25_17875 | Q54IL7 | Negative | 4364252 - 4365064 | 28233.3 |
| doxx family membrane protein | H9N25_17880 | Q11QI8 | Negative | 4365426 - 4366255 | 30768.2 |
| acetylornithine carbamoyltransferase | H9N25_17885 | Q8A1E9 | Negative | 4366363 - 4367337 | 36511.8 |
| aspartate aminotransferase family protein | H9N25_17890 | O30156 | Negative | 4367449 - 4368579 | 40810.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

