Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m28 family peptidase | H9N25_17795 | C5FNB5 | Positive | 4338098 - 4339732 | 60319.0 |
| iron-sulfur cluster-binding protein | H9N25_17800 | Q65EM0 | Positive | 4340174 - 4341562 | 52323.9 |
| dehydrogenase e1 component subunit alpha/beta | H9N25_17805 | Q9SAV3 | Positive | 4341593 - 4343569 | 73631.3 |
| doxx family membrane protein | H9N25_17810 | A6GYI0 | Positive | 4343634 - 4345274 | 60218.9 |
| sprt-like domain-containing protein | H9N25_17815 | Not Available | Negative | 4345440 - 4346048 | 23892.9 |
| gxxexxy protein | H9N25_17820 | Not Available | Negative | 4346095 - 4346472 | 14253.9 |
| doxx family membrane protein | H9N25_17825 | Not Available | Negative | 4346540 - 4348806 | 82277.6 |
| peptide chain release factor 3 | H9N25_17830 | A1AME1 | Positive | 4349270 - 4350853 | 60070.5 |
| glycoside hydrolase family 32 protein | H9N25_17835 | P05656 | Negative | 4350935 - 4352455 | 56950.9 |
| wyl domain-containing protein | H9N25_17840 | Not Available | Negative | 4352503 - 4353555 | 40897.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

