Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleotide pyrophosphohydrolase | H9N25_17695 | P42979 | Negative | 4318466 - 4318795 | 12450.8 |
| glycosyltransferase family 39 protein | H9N25_17700 | Not Available | Negative | 4318785 - 4320326 | 59278.2 |
| d-tyrosyl-trna(tyr) deacylase | H9N25_17705 | Q650H8 | Negative | 4320416 - 4320868 | 16184.9 |
| hypothetical protein | H9N25_17710 | Not Available | Positive | 4320881 - 4321924 | 40409.3 |
| hypothetical protein | H9N25_17715 | Not Available | Positive | 4321890 - 4324346 | 94118.2 |
| ketoacyl-acp synthase iii | H9N25_17720 | A7FH25 | Negative | 4324578 - 4325624 | 38218.6 |
| atp-dependent clp protease adaptor clps | H9N25_17725 | Q8DJY3 | Positive | 4325784 - 4326065 | 10936.0 |
| thioredoxin family protein | H9N25_17730 | Not Available | Negative | 4326238 - 4326837 | 22546.3 |
| 16s rrna (adenine(1518)-n(6)/adenine(1519)-n(6))- dimethyltransferase rsma | H9N25_17735 | Q11UL8 | Negative | 4327155 - 4327940 | 29823.2 |
| 4-hydroxythreonine-4-phosphate dehydrogenase pdxa | H9N25_17740 | Q89ZK3 | Positive | 4328098 - 4329177 | 39182.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

