Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family membrane protein | H9N25_17645 | Not Available | Positive | 4305727 - 4306823 | 40286.5 |
| sigma 54-interacting transcriptional regulator | H9N25_17650 | Not Available | Positive | 4306977 - 4308464 | 56140.3 |
| aaa family atpase | H9N25_17655 | Not Available | Positive | 4308471 - 4309217 | 28171.4 |
| metallophosphoesterase | H9N25_17660 | O34870 | Positive | 4309273 - 4310535 | 47583.5 |
| response regulator transcription factor | H9N25_17665 | Q4LAJ9 | Negative | 4310635 - 4311324 | 26318.0 |
| hamp domain-containing histidine kinase | H9N25_17670 | Q08408 | Negative | 4311414 - 4313087 | 63456.9 |
| s9 family peptidase | H9N25_17675 | V5YMB3 | Negative | 4313091 - 4314974 | 71514.7 |
| tetratricopeptide repeat protein | H9N25_17680 | Not Available | Positive | 4315203 - 4317026 | 69949.8 |
| gnat family n-acetyltransferase | H9N25_17685 | Not Available | Negative | 4317164 - 4317718 | 21283.2 |
| duf4286 family protein | H9N25_17690 | Not Available | Positive | 4318109 - 4318420 | 12108.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

