Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gliding motility protein | H9N25_17545 | Not Available | Positive | 4281687 - 4284452 | 105081.0 |
| transglycosylase domain-containing protein | H9N25_17550 | O66874 | Positive | 4284557 - 4286776 | 83117.8 |
| excinuclease abc subunit c | H9N25_17555 | A5FM03 | Positive | 4286970 - 4288772 | 69235.7 |
| gliding motility protein gldn | H9N25_17560 | Not Available | Negative | 4288876 - 4289790 | 34675.7 |
| doxx family membrane protein | H9N25_17565 | Not Available | Negative | 4289798 - 4291329 | 56202.4 |
| gliding motility protein gldl | H9N25_17570 | Not Available | Negative | 4291372 - 4292175 | 28615.1 |
| sumf1/egtb/pvdo family nonheme iron enzyme | H9N25_17575 | Q58CP2 | Negative | 4292216 - 4293541 | 49300.9 |
| uroporphyrinogen-iii synthase | H9N25_17580 | Not Available | Negative | 4293766 - 4294536 | 29395.3 |
| duf4271 domain-containing protein | H9N25_17585 | Not Available | Negative | 4294551 - 4295528 | 37446.8 |
| hypothetical protein | H9N25_17590 | Not Available | Positive | 4295646 - 4295873 | 8938.73 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

