Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 5'-nucleotidase, lipoprotein e(p4) family | H9N25_17495 | P26093 | Negative | 4273504 - 4274271 | 29278.6 |
| pkd domain-containing protein | H9N25_17500 | Q58863 | Positive | 4274444 - 4275076 | 23126.6 |
| atp synthase f1 subunit gamma | H9N25_17505 | A6H2D6 | Negative | 4275421 - 4276317 | 32832.6 |
| f0f1 atp synthase subunit alpha | H9N25_17510 | A5FL34 | Negative | 4276405 - 4277979 | 56717.4 |
| atp synthase f1 subunit delta | H9N25_17515 | Q11YP2 | Negative | 4278121 - 4278660 | 19571.0 |
| f0f1 atp synthase subunit b | H9N25_17520 | A0M6G6 | Negative | 4278722 - 4279216 | 18522.6 |
| atp synthase f0 subunit c | H9N25_17525 | Q8A9V0 | Negative | 4279304 - 4279519 | 6717.43 |
| f0f1 atp synthase subunit a | H9N25_17530 | B3QZE8 | Negative | 4279562 - 4280731 | 42797.1 |
| hypothetical protein | H9N25_17535 | Not Available | Negative | 4280746 - 4281135 | 14655.9 |
| atpz/atpi family protein | H9N25_17540 | Not Available | Negative | 4281352 - 4281576 | 8133.84 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

