Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_17445 | Not Available | Positive | 4264599 - 4264967 | 12949.7 |
| ycei family protein | H9N25_17450 | Not Available | Positive | 4265016 - 4265558 | 20205.4 |
| hypothetical protein | H9N25_17455 | Not Available | Positive | 4265565 - 4266512 | 35283.0 |
| rieske (2fe-2s) protein | H9N25_17460 | Not Available | Positive | 4266545 - 4266997 | 15122.9 |
| abc transporter permease | H9N25_17465 | P42063 | Negative | 4267058 - 4268200 | 41853.1 |
| glycosyltransferase | H9N25_17470 | Q8YMK0 | Negative | 4268200 - 4269336 | 42739.3 |
| flippase-like domain-containing protein | H9N25_17475 | Not Available | Negative | 4269314 - 4270291 | 37557.5 |
| crossover junction endodeoxyribonuclease ruvc | H9N25_17480 | Q11T17 | Positive | 4270333 - 4270920 | 21376.3 |
| duf4349 domain-containing protein | H9N25_17485 | Not Available | Negative | 4271324 - 4272214 | 33758.9 |
| hypothetical protein | H9N25_17490 | Not Available | Negative | 4273228 - 4273446 | 8072.03 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

