Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| doxx family membrane protein | H9N25_01705 | Q8WNQ7 | Positive | 444985 - 446366 | 49764.1 |
| tetratricopeptide repeat protein | H9N25_01710 | O32102 | Negative | 446381 - 447616 | 47000.6 |
| universal stress protein | H9N25_01715 | Q57951 | Positive | 447947 - 448822 | 32797.7 |
| alcohol dehydrogenase adhp | H9N25_01720 | Q8GIX7 | Positive | 448877 - 449911 | 37036.0 |
| pyridoxamine 5'-phosphate oxidase family protein | H9N25_01725 | P13486 | Positive | 449946 - 450401 | 17420.8 |
| hypothetical protein | H9N25_01730 | Not Available | Positive | 450583 - 452364 | 66635.0 |
| pas domain-containing sensor histidine kinase | H9N25_01735 | P23222 | Positive | 452421 - 453611 | 44494.3 |
| response regulator | H9N25_01740 | Q31S42 | Positive | 453636 - 454667 | 38586.4 |
| duf5077 domain-containing protein | H9N25_01745 | Not Available | Negative | 454824 - 456128 | 46309.8 |
| lactate dehydrogenase | H9N25_01750 | J7SHB8 | Positive | 456845 - 457273 | 15319.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

