Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor family protein | H9N25_17345 | Not Available | Negative | 4242434 - 4244812 | 90075.4 |
| hypothetical protein | H9N25_17350 | Not Available | Negative | 4244843 - 4245646 | 30465.8 |
| n-acetylmuramoyl-l-alanine amidase | H9N25_17355 | Q49Y70 | Negative | 4245658 - 4247217 | 58376.9 |
| blai/meci/copy family transcriptional regulator | H9N25_17360 | P68261 | Negative | 4247214 - 4247582 | 14363.3 |
| duf1345 domain-containing protein | H9N25_17365 | Not Available | Negative | 4248277 - 4248948 | 25373.4 |
| class i sam-dependent methyltransferase | H9N25_17370 | G8T6H8 | Negative | 4248952 - 4249734 | 29980.9 |
| hypothetical protein | H9N25_17375 | Q9PD85 | Positive | 4249779 - 4250642 | 33265.5 |
| glycoside hydrolase | H9N25_17380 | P20533 | Positive | 4250661 - 4251785 | 42208.7 |
| cap domain-containing protein | H9N25_17385 | O31398 | Negative | 4251780 - 4252262 | 17354.0 |
| glycoside hydrolase | H9N25_17390 | F7J1C8 | Negative | 4252331 - 4253143 | 30061.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

