Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cbb3-type cytochrome c oxidase subunit i | H9N25_17295 | P98000 | Negative | 4227732 - 4229612 | 70287.6 |
| cytochrome c oxidase subunit ii | H9N25_17300 | P98053 | Negative | 4229636 - 4230865 | 46119.4 |
| quinol:cytochrome c oxidoreductase | H9N25_17305 | Not Available | Negative | 4230935 - 4232158 | 46285.9 |
| cytochrome c | H9N25_17310 | Not Available | Negative | 4232173 - 4232778 | 21959.0 |
| duf3341 domain-containing protein | H9N25_17315 | Not Available | Negative | 4232750 - 4233286 | 20026.4 |
| polysulfide reductase nrfd | H9N25_17320 | Q9HR72 | Negative | 4233289 - 4234761 | 55835.3 |
| tat-variant-translocated molybdopterin oxidoreductase | H9N25_17325 | Q72E85 | Negative | 4234788 - 4237820 | 110732.0 |
| c-type cytochrome | H9N25_17330 | P0DOV3 | Negative | 4237869 - 4239164 | 47621.1 |
| deoxyhypusine synthase family protein | H9N25_17335 | O28088 | Negative | 4239420 - 4240400 | 36968.2 |
| bama/tama family outer membrane protein | H9N25_17340 | Not Available | Positive | 4241021 - 4242151 | 42455.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

