Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| susc/raga family tonb-linked outer membrane protein | H9N25_17245 | T2KPJ3 | Negative | 4216656 - 4220279 | 132832.0 |
| fecr domain-containing protein | H9N25_17250 | Not Available | Negative | 4220629 - 4221789 | 43176.4 |
| rna polymerase sigma-70 factor | H9N25_17255 | O05404 | Negative | 4221850 - 4222449 | 22907.9 |
| duf420 domain-containing protein | H9N25_17260 | O31845 | Negative | 4222658 - 4223203 | 20510.1 |
| sco family protein | H9N25_17265 | Not Available | Negative | 4223270 - 4223965 | 26360.2 |
| cytochrome c oxidase subunit iv family protein | H9N25_17270 | Not Available | Negative | 4223965 - 4224318 | 13497.0 |
| cytochrome c oxidase subunit 3 | H9N25_17275 | P34958 | Negative | 4224344 - 4225057 | 27099.3 |
| heme-copper oxidase subunit iii | H9N25_17280 | Q04442 | Negative | 4225089 - 4225655 | 20992.3 |
| protoheme ix farnesyltransferase | H9N25_17285 | Q11SZ7 | Negative | 4225671 - 4226579 | 33789.4 |
| cox15/ctaa family protein | H9N25_17290 | Q6G3L5 | Negative | 4226592 - 4227650 | 39551.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

