Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative ig domain-containing protein | H9N25_17195 | Q6GDE9 | Negative | 4193107 - 4206222 | 442495.0 |
| hypothetical protein | H9N25_17200 | Not Available | Negative | 4206198 - 4206563 | 13039.7 |
| hypothetical protein | H9N25_17205 | Not Available | Positive | 4206803 - 4209394 | 101203.0 |
| ompa family protein | H9N25_17210 | P28612 | Negative | 4209873 - 4210712 | 31246.7 |
| duf2461 domain-containing protein | H9N25_17215 | Not Available | Negative | 4210820 - 4211479 | 25288.6 |
| duf983 domain-containing protein | H9N25_17220 | Not Available | Negative | 4211623 - 4212024 | 15615.1 |
| hypothetical protein | H9N25_17225 | Not Available | Negative | 4212029 - 4212301 | 10121.8 |
| duf4302 domain-containing protein | H9N25_17230 | Not Available | Negative | 4212420 - 4213772 | 48132.1 |
| hypothetical protein | H9N25_17235 | Not Available | Negative | 4213783 - 4215168 | 52056.1 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_17240 | Not Available | Negative | 4215174 - 4216643 | 54437.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

