Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lantibiotic dehydratase | H9N25_17145 | P30195 | Negative | 4176492 - 4179590 | 119588.0 |
| hypothetical protein | H9N25_17150 | P33115 | Negative | 4179686 - 4180858 | 44810.0 |
| molecular chaperone htpg | H9N25_17155 | Q8A9B8 | Positive | 4181545 - 4183425 | 70903.6 |
| type i restriction enzyme hsdr n-terminal domain-containing protein | H9N25_17160 | Not Available | Negative | 4183586 - 4184062 | 18407.3 |
| hypothetical protein | H9N25_17165 | Not Available | Negative | 4184091 - 4184465 | 14714.6 |
| response regulator transcription factor | H9N25_17170 | Q82Z76 | Positive | 4184843 - 4185586 | 27958.8 |
| sensor histidine kinase | H9N25_17175 | P0AD15 | Positive | 4186246 - 4186995 | 28965.0 |
| lantibiotic dehydratase | H9N25_17180 | P39774 | Negative | 4186992 - 4189790 | 107090.0 |
| ompa family protein | H9N25_17185 | Q7NFT5 | Negative | 4190059 - 4192059 | 74897.5 |
| porp/sprf family type ix secretion system membrane protein | H9N25_17190 | Not Available | Negative | 4192068 - 4193069 | 35920.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

