Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter permease subunit | H9N25_17095 | C5BHN3 | Positive | 4167883 - 4168278 | 14557.7 |
| efflux rnd transporter permease subunit | H9N25_17100 | Q57124 | Positive | 4168278 - 4171388 | 114122.0 |
| tolc family protein | H9N25_17105 | Q8G0Y6 | Positive | 4171390 - 4172700 | 48342.6 |
| n-acetylglucosamine kinase | H9N25_17110 | Not Available | Positive | 4172759 - 4173601 | 31190.2 |
| response regulator | H9N25_17115 | Q31S42 | Positive | 4173697 - 4174089 | 14740.0 |
| duf4241 domain-containing protein | H9N25_17120 | Not Available | Positive | 4174194 - 4174736 | 20177.0 |
| hypothetical protein | H9N25_17125 | Not Available | Positive | 4174833 - 4175063 | 8514.27 |
| hypothetical protein | H9N25_17130 | Not Available | Positive | 4175196 - 4175282 | 3259.87 |
| transposase family protein | H9N25_17135 | P76119 | Positive | 4175294 - 4175518 | 8456.14 |
| isas1 family transposase | H9N25_17140 | P75741 | Positive | 4175827 - 4176159 | 12854.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

