Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_17045 | Not Available | Positive | 4152576 - 4153538 | 37235.8 |
| ompa family protein | H9N25_17050 | P22263 | Negative | 4153775 - 4155097 | 47324.0 |
| duf885 family protein | H9N25_17055 | Not Available | Negative | 4155483 - 4157102 | 62749.3 |
| gaf domain-containing protein | H9N25_17060 | Not Available | Negative | 4157309 - 4159645 | 90301.0 |
| gamma-glutamyltransferase | H9N25_17065 | P18956 | Negative | 4159729 - 4161450 | 61722.1 |
| doxx family membrane protein | H9N25_17070 | Q7TYX8 | Negative | 4161422 - 4163196 | 64948.2 |
| hypothetical protein | H9N25_17075 | Not Available | Positive | 4163451 - 4163915 | 16542.9 |
| hypothetical protein | H9N25_17080 | Not Available | Negative | 4164043 - 4164468 | 16286.8 |
| m61 family metallopeptidase | H9N25_17085 | Not Available | Negative | 4164585 - 4166414 | 67536.8 |
| efflux rnd transporter periplasmic adaptor subunit | H9N25_17090 | D3V7P2 | Positive | 4166789 - 4167886 | 38634.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

