Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr01777 family protein | H9N25_16995 | P77775 | Positive | 4141286 - 4142188 | 33404.6 |
| deoxyribodipyrimidine photo-lyase | H9N25_17000 | Q55081 | Positive | 4142315 - 4143616 | 51467.6 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | H9N25_17005 | Q8K943 | Negative | 4143606 - 4144514 | 32980.1 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | H9N25_17010 | P57599 | Negative | 4144518 - 4145003 | 17435.2 |
| fkbp-type peptidyl-prolyl cis-trans isomerase | H9N25_17015 | Q8K943 | Negative | 4145067 - 4145513 | 16288.5 |
| acyl-coa dehydrogenase family protein | H9N25_17020 | O32176 | Negative | 4145813 - 4147606 | 65666.0 |
| doxx family membrane protein | H9N25_17025 | Not Available | Negative | 4147748 - 4148097 | 13057.9 |
| acetyl-coa c-acyltransferase | H9N25_17030 | O32177 | Negative | 4148208 - 4149383 | 41522.2 |
| enoyl-coa hydratase/isomerase family protein | H9N25_17035 | O32178 | Negative | 4149537 - 4151942 | 89108.5 |
| marr family transcriptional regulator | H9N25_17040 | B5XWN4 | Negative | 4152017 - 4152451 | 16429.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

