Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isoleucyl-trna synthetase | H9N25_16945 | Not Available | Negative | 4128939 - 4129211 | 9977.47 |
| hypothetical protein | H9N25_16950 | Not Available | Negative | 4129208 - 4129396 | 6887.02 |
| isoleucine--trna ligase | H9N25_16955 | Q5LCU8 | Positive | 4129481 - 4132882 | 129508.0 |
| trar/dksa family transcriptional regulator | H9N25_16960 | P0CAU3 | Positive | 4132913 - 4133296 | 14411.0 |
| lipoprotein signal peptidase | H9N25_16965 | B2RI39 | Positive | 4133296 - 4133898 | 22829.0 |
| duf1080 domain-containing protein | H9N25_16970 | Not Available | Positive | 4134295 - 4134975 | 25376.6 |
| duf2809 domain-containing protein | H9N25_16975 | Not Available | Negative | 4135064 - 4135453 | 14906.6 |
| 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase | H9N25_16980 | P0AFG7 | Negative | 4135553 - 4136782 | 43389.5 |
| 2-oxoglutarate dehydrogenase e1 component | H9N25_16985 | Q59106 | Negative | 4136858 - 4139653 | 105227.0 |
| dash family cryptochrome | H9N25_16990 | Q7NMD1 | Negative | 4139841 - 4141115 | 48173.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

