Pedobacter riviphilus SW-16

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter riviphilus SW-16 is a species of bacteria characterized by the presence of flagella, which suggests that it is motile and capable of moving through its environment. This motility can be advantageous for locating nutrients or evading unfavorable conditions. Genomically, it is notable for having a single replicon, indicating a streamlined genetic structure that can facilitate efficient replication and maintenance of its genetic material. The genomic information for Pedobacter riviphilus SW-16 is accessible via the accession number CP061171.1, providing a resource for researchers interested in its genetic makeup and potential applications. The traits of this bacterium align it with other members of the Pedobacter genus, which are often found in diverse ecological niches, including soil and aquatic environments. In terms of ecological insight, the motility conferred by flagella may enable Pedobacter riviphilus SW-16 to thrive in dynamic environments, where the ability to move towards more favorable conditions can be crucial for survival. This adaptability could allow it to play a role in nutrient cycling and the breakdown of organic matter within its habitat, thereby contributing to ecosystem health and stability. Understanding the characteristics of Pedobacter riviphilus SW-16 may help illuminate its ecological roles and interactions within microbial communities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter riviphilus
StrainSW-16

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter riviphilus SW-16, Complete Genome

Gene Summary

Adenine Count

1802189 bp

Thymine Count

1779389 bp

Guanine Count

1131489 bp

Cytosine Count

1112294 bp

Genome Length

5825361 bp

Protein-coding Genes

4781 genes

Non-Coding Genes

66 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
isoleucyl-trna synthetaseH9N25_16945Not AvailableNegative4128939 - 41292119977.47
hypothetical proteinH9N25_16950Not AvailableNegative4129208 - 41293966887.02
isoleucine--trna ligaseH9N25_16955Q5LCU8Positive4129481 - 4132882129508.0
trar/dksa family transcriptional regulatorH9N25_16960P0CAU3Positive4132913 - 413329614411.0
lipoprotein signal peptidaseH9N25_16965B2RI39Positive4133296 - 413389822829.0
duf1080 domain-containing proteinH9N25_16970Not AvailablePositive4134295 - 413497525376.6
duf2809 domain-containing proteinH9N25_16975Not AvailableNegative4135064 - 413545314906.6
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferaseH9N25_16980P0AFG7Negative4135553 - 413678243389.5
2-oxoglutarate dehydrogenase e1 componentH9N25_16985Q59106Negative4136858 - 4139653105227.0
dash family cryptochromeH9N25_16990Q7NMD1Negative4139841 - 414111548173.7

Displaying genes 3391 – 3400 of 4847 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.