Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | H9N25_01655 | Not Available | Positive | 430584 - 432428 | 71436.2 |
| doxx family membrane protein | H9N25_01660 | Not Available | Negative | 432572 - 433533 | 37359.4 |
| hypothetical protein | H9N25_01665 | Not Available | Negative | 433526 - 433726 | 7653.37 |
| hypothetical protein | H9N25_01670 | Not Available | Negative | 433737 - 433889 | 5462.98 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_01675 | T2KN63 | Negative | 433917 - 435398 | 54963.5 |
| tonb-dependent receptor | H9N25_01680 | T2KPJ3 | Negative | 435412 - 438546 | 112620.0 |
| hypothetical protein | H9N25_01685 | Not Available | Negative | 438999 - 439148 | 5794.26 |
| susc/raga family tonb-linked outer membrane protein | H9N25_01690 | T2KM18 | Positive | 440086 - 441693 | 56660.2 |
| doxx family membrane protein | H9N25_01695 | T2KPJ3 | Positive | 441684 - 443444 | 62833.2 |
| ragb/susd family nutrient uptake outer membrane protein | H9N25_01700 | T2KNB8 | Positive | 443457 - 444947 | 53884.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

