Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter riviphilus |
| Strain | SW-16 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | soil |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1802189 bp
Thymine Count
1779389 bp
Guanine Count
1131489 bp
Cytosine Count
1112294 bp
Genome Length
5825361 bp
Protein-coding Genes
4781 genes
Non-Coding Genes
66 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-val | Not Available | Not Available | Positive | 4118978 - 4119055 | Not Available |
| Trna-val | Not Available | Not Available | Positive | 4119108 - 4119184 | Not Available |
| dna repair protein reco | H9N25_16905 | Q5LIK3 | Negative | 4119279 - 4120004 | 28141.3 |
| mmpl family transporter | H9N25_16910 | Q58957 | Positive | 4120325 - 4122475 | 79726.3 |
| hypothetical protein | H9N25_16915 | Not Available | Negative | 4122561 - 4124417 | 68268.7 |
| fecr domain-containing protein | H9N25_16920 | P23485 | Negative | 4124424 - 4125374 | 35212.1 |
| doxx family membrane protein | H9N25_16925 | Q06198 | Negative | 4125379 - 4125944 | 21425.6 |
| sdr family nad(p)-dependent oxidoreductase | H9N25_16930 | Q6P3L6 | Negative | 4125994 - 4126785 | 29113.0 |
| nad-dependent epimerase/dehydratase family protein | H9N25_16935 | P73212 | Negative | 4126928 - 4127932 | 37532.4 |
| hypothetical protein | H9N25_16940 | Not Available | Negative | 4127934 - 4128599 | 25420.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.

